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Difference between revisions of "EU Codefest 2012"

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(EU-codefest 2012 was 19 and 20 July in Lodi Italy)
(EU-codefest 2012 was 19 and 20 July in Lodi Italy)
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= EU-codefest 2012 was 19 and 20 July in Lodi Italy =
 
= EU-codefest 2012 was 19 and 20 July in Lodi Italy =
  
In coordination with the [[BOSC]] committee we are organised the first EU-Codefest, a low-key event the week after [[BOSC 2012]] in California.  
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In coordination with the [[BOSC]] committee we organised the first EU-Codefest, a low-key event the week after [[BOSC 2012]] in California.  
  
 
The EU-Codefest took place on 19 and 20 July 2012, in [http://www.openstreetmap.org/?lat=45.31&lon=9.508&zoom=10&layers=M Lodi, Italy], near the Bergamo and Milano airports (Bergamo is a hub for Ryanair).
 
The EU-Codefest took place on 19 and 20 July 2012, in [http://www.openstreetmap.org/?lat=45.31&lon=9.508&zoom=10&layers=M Lodi, Italy], near the Bergamo and Milano airports (Bergamo is a hub for Ryanair).

Revision as of 09:27, 24 July 2012

EU-codefest 2012 was 19 and 20 July in Lodi Italy

In coordination with the BOSC committee we organised the first EU-Codefest, a low-key event the week after BOSC 2012 in California.

The EU-Codefest took place on 19 and 20 July 2012, in Lodi, Italy, near the Bergamo and Milano airports (Bergamo is a hub for Ryanair).

The EU-Codefest is modeled on the successful biohackathons in Japan, though we like it more free-flowing.

The weekend after 21 and 22 July continued (unofficially) to have a good time, and organised some outings.

Organising committee: Francesco Strozzi, Raoul Bonnal and Pjotr Prins

Location

Parco Tecnologico Padano vie Einstein - Loc. Cascina Codazza 26900, Lodi - ITALY

Topics

Three main topics were worked on during the CodeFest:

  • NGS and high performance parsers for OpenBio projects.
  • RDF and semantic web for bioinformatics.
  • Bioinformatics pipelines definition, execution and distribution.

During the conference we discussed current issues and added

  • Service discovery and integration (Debian, BioMoby, biogems.info, BioLinux)
  • Workflow (bio-ngs, Galaxy, Taverna)
  • PBS (bio-ngs)
  • Software
    • bio-ngs
    • bio-maf introducing into pipeline
    • gff3
    • biogems.info (Debian packages)
    • bio-table (RDF support)
    • biowsr

Talks

The following talks/introductons were given at the Codefest:

  • Semantic Web for Bioinformatics by Toshiaki Katayama, Tokyo, Japan
  • Writing the worlds fastest GFF3 parser by Marjan Povolni, Faculty of Technical Sciences Novi Sad, Serbia
  • Software resources for Bioinformatics, including http://biogems.info/ by Pjotr Prins, Wageningen University, The Netherlands

Reports

Adding a list of BioLinux Software packages to biogems.info

We recognise is it often hard to find relevant information on current software packages. At the USA codefest, a week earlier, Brad Chapman and Hervé Ménager created a Manifest of bioinformatics packages installed on a running CloudBiolinux system (VM). At the EU codefest a web representation was created that parsed the manifest, pulled some more information from the Debian package information and generates the page http://www.biogems.info/biolinux.html.