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SemWeb:Bio2RDF Endpoints
From Open Bioinformatics Foundation
Here are the current working Sparql Endpoints for Bio2RDF has of July 7th 2010, 17:23 PM
SELECT * WHERE { <http://bio2rdf.org/pdb:1GOF> ?p ?o . optional {?o ?p2 ?o2 .} optional {?o2 ?p3 ?o3 .} }
select distinct ?g ?o where { graph ?g { ?s ?p ?o . ?o bif:contains "HK1" . } }
select ?label ?o where { graph ?g { ?s ?p ?o . ?o bif:contains "HK1" . } graph ?g { ?s2 a <http://bio2rdf.org/pubmed:JournalArticle> . ?s2 rdfs:label ?label . } } limit 5
select distinct ?rl ?fs ?fe where { ?o <http://bio2rdf.org/ncbi_resource:featureStart> ?fs . filter (xsd:integer(?fs) < 10000) ?refseq <http://bio2rdf.org/ncbi_resource:feature> ?o . ?refseq rdfs:label $rl . ?o <http://bio2rdf.org/ncbi_resource:featureEnd> ?fe . } limit 5
- http://omim.bio2rdf.org/sparql
- http://affymetrix.bio2rdf.org/sparql
- http://atlas.bio2rdf.org/sparql
- http://quebec.bio2rdf.org/sparql
- http://bind.bio2rdf.org/sparql
- http://biocarta.bio2rdf.org/sparql
- http://biocyc.bio2rdf.org/sparql
- http://biopax.bio2rdf.org/sparql
- http://chebi.bio2rdf.org/sparql
- http://cpath.bio2rdf.org/sparql
- http://ec.bio2rdf.org/sparql
- http://genbank.bio2rdf.org/sparql
- http://geneid.bio2rdf.org/sparql
- http://go.bio2rdf.org/sparql
- http://hgnc.bio2rdf.org/sparql
- http://homologene.bio2rdf.org/sparql
- http://inoh.bio2rdf.org/sparql
- http://iproclass.bio2rdf.org/sparql
- http://kegg.bio2rdf.org/sparql
- http://mesh.bio2rdf.org/sparql
- http://mgi.bio2rdf.org/sparql
- http://obo.bio2rdf.org/sparql
- http://pid.bio2rdf.org/sparql
- http://protein.bio2rdf.org/sparql
- http://pubchem.bio2rdf.org/sparql
- http://reactome.bio2rdf.org/sparql
- http://registry.bio2rdf.org/sparql
- http://release.bio2rdf.org/sparql
- http://sgd.bio2rdf.org/sparql
- http://taxonomy.bio2rdf.org/sparql
- http://uniparc.bio2rdf.org/sparql
- http://uniprot.bio2rdf.org/sparql
- http://unists.bio2rdf.org/sparql
- http://uniref.bio2rdf.org/sparql
URI are build with this pattern
http://bio2rdf.org/[namespace]:[identifier]
To get information about this URI, you can either ask directly
http://bio2rdf.org/[namespace]:[identifier]
or ask the corresponding endpoint about it. The corresponding endpoints is located at
http://[namespace].bio2rdf.org/sparql
P.S.: The refseq endpoint is experimental. Instead of using the URI pattern http://bio2rdf.org/refseq:[identifier] it use http://bio2rdf.org/ncbi:[identifier]