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Difference between revisions of "BOSC 2013 Schedule"

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BOSC 2013 Schedule coming soon!
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[[File:Pear.png|100px|right|BOSC logo|link=BOSC_2013]]
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 +
= Day 1: Friday,  July 19 =
 +
 
 +
{| border="1" cellspacing="0" cellpadding="7"
 +
! Time
 +
! Topic
 +
! Speaker or Moderator
 +
|-
 +
| 7:30-9:00
 +
| Registration (Early arrival is recommended as there are usually long lines)
 +
| '''Registration'''
 +
|-
 +
| 9:00-9:15
 +
| Introduction and welcome
 +
| Nomi Harris (Chair, BOSC 2013)
 +
|-
 +
| 9:15-10:15
 +
| [Keynote] Network ready research: The role of open source and open thinking
 +
| Cameron Neylon (Public Library of Science)
 +
|-
 +
| '''10:15-10:45'''
 +
| '''Coffee Break'''
 +
|
 +
|-
 +
| 10:45-12:30
 +
| Session: Open Science
 +
| Chair:
 +
|-
 +
| 10:45
 +
| [Open Science] Open Science Data Framework: A Cloud enabled system to store, access, and analyze scientific data
 +
|
 +
|-
 +
| 11:00
 +
| [Open Science] myExperiment Research Objects: Beyond Workflows and Packs
 +
|
 +
|-
 +
| 11:15
 +
| [Open Science] Empowering Cancer Research Through Open Development
 +
|
 +
|-
 +
| 11:30
 +
| [Open Science] DNAdigest - a not-for-profit organisation to promote and enable open-access sharing of genomics data
 +
|
 +
|-
 +
| 11:45
 +
| [Open Science]  Jug: Reproducible Research in Python
 +
|
 +
|-
 +
| 11:50
 +
| [Open Science] OpenLabFramework: A Next-Generation Open-Source Laboratory Information Management System for Efficient Sample Tracking
 +
|
 +
|-
 +
| 11:55
 +
| [Open Science] KBase: An Integrated Community Resource for Systems Biology
 +
|
 +
|-
 +
| 12:00
 +
| [Open Science] Ten Simple Rules for the Open Development of Scientific Software
 +
|
 +
|-
 +
| '''12:30-1:30'''
 +
| '''Lunch'''
 +
|
 +
|-
 +
| 1:00-2:00
 +
| '''Poster Session I'''
 +
|
 +
|-
 +
| 2:00-3:30
 +
| Session: Visualization
 +
| Chair: Jan Aerts?
 +
|-
 +
| 2:00
 +
| [Visualization] Refinery Platform - Integrating Visualization and Analysis of Large-Scale Biological Data
 +
|
 +
|-
 +
| 2:25
 +
| [Visualization] MetaSee: An interactive visualization toolbox for metagenomic sample analysis and comparison
 +
|
 +
|-
 +
| 2:40
 +
| [Visualization] DGE-Vis: Visualisation of RNA-seq data for Differential Gene Expression analysis
 +
|
 +
|-
 +
| 2:55
 +
| [Visualization] Genomic Visualization Everywhere with Dalliance
 +
|
 +
|-
 +
| 3:10
 +
| [Visualization] Robust quality control of Next Generation Sequencing alignment data
 +
|
 +
|-
 +
| 3:25
 +
| [Visualization] Visualizing bacterial sequencing data with GenomeView
 +
|
 +
|-
 +
| '''3:30-4:00'''
 +
| '''Coffee Break'''
 +
|
 +
|-
 +
| 4:00-5:15
 +
| Session: Bioinformatics Open Source Project Updates
 +
| Chair:
 +
|-
 +
| 4:00
 +
| [Project Updates] BioRuby project updates - power of modularity in the community-based open source development model
 +
|
 +
|-
 +
| 4:15
 +
| [Project Updates] InterMine - Collaborative Data Mining
 +
|
 +
|-
 +
| 4:30
 +
| [Project Updates] The GenoCAD 2.2 Grammar Editor
 +
|
 +
|-
 +
| 4:45
 +
| [Project Updates] Improvements and new features in the 7th major release of the Bio-Linux distro
 +
|
 +
|-
 +
| 5:00
 +
| [Project Updates] Biopython project update
 +
|
 +
|-
 +
| 5:15
 +
| Announcements
 +
| Nomi Harris (Chair, BOSC 2013)
 +
|-
 +
| 5:20-6:30
 +
|'''Poster Session II''' (Location TBA)--there are still spots open for last-minute posters!
 +
|
 +
|-
 +
| 5:20-6:30
 +
| [[BOSC_2013/BOFs|BOFs]]
 +
|
 +
|-
 +
| 7:00
 +
| Pay-your-own-way BOSC dinner
 +
|
 +
|-
 +
|}
 +
 
 +
<br>
 +
[[File:Pear.png|100px|right|BOSC logo|link=BOSC_2013]]
 +
 
 +
= Day 2: Saturday, July 20 =
 +
 
 +
{| border="1" cellspacing="0" cellpadding="7"
 +
! Time
 +
! Topic
 +
! Speaker or Moderator
 +
|-
 +
| 8:45
 +
| Announcements
 +
| Nomi Harris
 +
|-
 +
| 8:50
 +
| Codefest 2013 Report
 +
| Brad Chapman
 +
|-
 +
| 9:00
 +
| Introduction to the [http://www.open-bio.org/wiki/Main_Page Open Bioinformatics Foundation]
 +
| Hilmar Lapp (President, Open Bioinformatics Foundation)
 +
|-
 +
| 9:15
 +
| [Keynote] Biological sequence analysis in the post-data era
 +
| Sean Eddy (Janelia Farm)
 +
|-
 +
| '''10:15-10:45'''
 +
| '''Coffee Break'''
 +
|
 +
|-
 +
| 10:45-12:30
 +
| Session: Software Interoperability
 +
| Chair: Jeremy Goecks?
 +
|-
 +
| 10:45
 +
| [Interoperability] BioBlend - Enabling Pipeline Dreams
 +
|
 +
|-
 +
| 11:10
 +
| [Interoperability] Taverna Components: Semantically annotated and shareable units of functionality
 +
|
 +
|-
 +
| 11:35
 +
| [Interoperability] UGENE Workflow Designer – flexible control and extension of pipelines with scripts
 +
|
 +
|-
 +
| 11:50
 +
| [Interoperability] Oqtans: A Multifunctional Workbench for RNA-seq Data Analysis
 +
|
 +
|-
 +
| 12:05
 +
| [Interoperability] PhyloCommons: community storage, annotation and reuse of phylogenies
 +
|
 +
|-
 +
| 12:10
 +
| [Interoperability] GEMBASSY: an EMBOSS associated package for genome analysis using G-language SOAP/REST web services
 +
|
 +
|-
 +
| 12:15
 +
| [Interoperability] Rubra - flexible distributed pipelines for bioinformatics
 +
|
 +
|-
 +
| '''12:30-1:30'''
 +
| '''Lunch'''
 +
|
 +
|-
 +
| 12:30-1:30
 +
| '''Poster Session III'''
 +
|
 +
|-
 +
| 1:30-3:30
 +
| Session: Cloud and Genome-Scale Computing
 +
| Chair:
 +
|-
 +
| 1:30
 +
| [Cloud/Genome-Scale] Towards Enabling Big Data and Federated Computing in the Cloud
 +
|
 +
|-
 +
| 1:45
 +
| [Cloud/Genome-Scale] MyGene.info: Making Elastic and Extensible Gene­-centric Web Services
 +
|
 +
|-
 +
| 2:00
 +
| [Cloud/Genome-Scale] An update on the Seal Hadoop-based sequence processing toolbox
 +
|
 +
|-
 +
| 2:15
 +
| [Cloud/Genome-Scale] Open Source Configuration of Bioinformatics Infrastructure
 +
|
 +
|-
 +
| 2:30
 +
| [Cloud/Genome-Scale] An Open Source Framework for Gene Prioritization
 +
|
 +
|-
 +
| 2:55
 +
| [Cloud/Genome-Scale] RAMPART (aRobustAutomaticMultipleAssembleRToolkit)
 +
|
 +
|-
 +
| 3:10
 +
| [Cloud/Genome-Scale] OmicsConnect: flexible multi-omics data capture and integration tools for high-throughput biology
 +
|
 +
|-
 +
| '''3:30-4:00'''
 +
| '''Coffee Break'''
 +
|
 +
|-
 +
| 4:00-4:40
 +
| Session: Translational Genomics
 +
| Chair: ? (Not Brad--he's speaking in this session AND chairing the panel after it)
 +
|-
 +
| 4:00
 +
| [Translational] Community development of human variant calling and validation pipelines
 +
|
 +
|-
 +
| 4:25
 +
| [Translational] Understanding Cancer Genomes Using Galaxy
 +
|
 +
|-
 +
| 4:40-5:30
 +
| '''Panel''': Strategies for Funding and Maintaining Open Source Software
 +
| Moderator: Brad Chapman
 +
Panelists: Peter Cock, Sean Eddy, Carole Goble, Richard Holland, Scott Markel, Jean Peccoud
 +
|-
 +
| 5:30-5:40
 +
| Presentation of Student Travel Awards
 +
| Nomi Harris
 +
|-
 +
| 5:40-6:40
 +
| [[BOSC_2013/BOFs|BOFs]]
 +
|
 +
|-
 +
|}
 +
 
 +
 
 +
----
 +
 
 +
== Return to '''[[BOSC_2013 | BOSC 2013]]''' main page ==
 +
 
 +
[[Category:BOSC]] [[Category:Conferences]]
 +
[[Category:BOSC Conferences]]

Revision as of 20:36, 26 May 2013

BOSC logo

Day 1: Friday, July 19

Time Topic Speaker or Moderator
7:30-9:00 Registration (Early arrival is recommended as there are usually long lines) Registration
9:00-9:15 Introduction and welcome Nomi Harris (Chair, BOSC 2013)
9:15-10:15 [Keynote] Network ready research: The role of open source and open thinking Cameron Neylon (Public Library of Science)
10:15-10:45 Coffee Break
10:45-12:30 Session: Open Science Chair:
10:45 [Open Science] Open Science Data Framework: A Cloud enabled system to store, access, and analyze scientific data
11:00 [Open Science] myExperiment Research Objects: Beyond Workflows and Packs
11:15 [Open Science] Empowering Cancer Research Through Open Development
11:30 [Open Science] DNAdigest - a not-for-profit organisation to promote and enable open-access sharing of genomics data
11:45 [Open Science] Jug: Reproducible Research in Python
11:50 [Open Science] OpenLabFramework: A Next-Generation Open-Source Laboratory Information Management System for Efficient Sample Tracking
11:55 [Open Science] KBase: An Integrated Community Resource for Systems Biology
12:00 [Open Science] Ten Simple Rules for the Open Development of Scientific Software
12:30-1:30 Lunch
1:00-2:00 Poster Session I
2:00-3:30 Session: Visualization Chair: Jan Aerts?
2:00 [Visualization] Refinery Platform - Integrating Visualization and Analysis of Large-Scale Biological Data
2:25 [Visualization] MetaSee: An interactive visualization toolbox for metagenomic sample analysis and comparison
2:40 [Visualization] DGE-Vis: Visualisation of RNA-seq data for Differential Gene Expression analysis
2:55 [Visualization] Genomic Visualization Everywhere with Dalliance
3:10 [Visualization] Robust quality control of Next Generation Sequencing alignment data
3:25 [Visualization] Visualizing bacterial sequencing data with GenomeView
3:30-4:00 Coffee Break
4:00-5:15 Session: Bioinformatics Open Source Project Updates Chair:
4:00 [Project Updates] BioRuby project updates - power of modularity in the community-based open source development model
4:15 [Project Updates] InterMine - Collaborative Data Mining
4:30 [Project Updates] The GenoCAD 2.2 Grammar Editor
4:45 [Project Updates] Improvements and new features in the 7th major release of the Bio-Linux distro
5:00 [Project Updates] Biopython project update
5:15 Announcements Nomi Harris (Chair, BOSC 2013)
5:20-6:30 Poster Session II (Location TBA)--there are still spots open for last-minute posters!
5:20-6:30 BOFs
7:00 Pay-your-own-way BOSC dinner


BOSC logo

Day 2: Saturday, July 20

Time Topic Speaker or Moderator
8:45 Announcements Nomi Harris
8:50 Codefest 2013 Report Brad Chapman
9:00 Introduction to the Open Bioinformatics Foundation Hilmar Lapp (President, Open Bioinformatics Foundation)
9:15 [Keynote] Biological sequence analysis in the post-data era Sean Eddy (Janelia Farm)
10:15-10:45 Coffee Break
10:45-12:30 Session: Software Interoperability Chair: Jeremy Goecks?
10:45 [Interoperability] BioBlend - Enabling Pipeline Dreams
11:10 [Interoperability] Taverna Components: Semantically annotated and shareable units of functionality
11:35 [Interoperability] UGENE Workflow Designer – flexible control and extension of pipelines with scripts
11:50 [Interoperability] Oqtans: A Multifunctional Workbench for RNA-seq Data Analysis
12:05 [Interoperability] PhyloCommons: community storage, annotation and reuse of phylogenies
12:10 [Interoperability] GEMBASSY: an EMBOSS associated package for genome analysis using G-language SOAP/REST web services
12:15 [Interoperability] Rubra - flexible distributed pipelines for bioinformatics
12:30-1:30 Lunch
12:30-1:30 Poster Session III
1:30-3:30 Session: Cloud and Genome-Scale Computing Chair:
1:30 [Cloud/Genome-Scale] Towards Enabling Big Data and Federated Computing in the Cloud
1:45 [Cloud/Genome-Scale] MyGene.info: Making Elastic and Extensible Gene­-centric Web Services
2:00 [Cloud/Genome-Scale] An update on the Seal Hadoop-based sequence processing toolbox
2:15 [Cloud/Genome-Scale] Open Source Configuration of Bioinformatics Infrastructure
2:30 [Cloud/Genome-Scale] An Open Source Framework for Gene Prioritization
2:55 [Cloud/Genome-Scale] RAMPART (aRobustAutomaticMultipleAssembleRToolkit)
3:10 [Cloud/Genome-Scale] OmicsConnect: flexible multi-omics data capture and integration tools for high-throughput biology
3:30-4:00 Coffee Break
4:00-4:40 Session: Translational Genomics Chair: ? (Not Brad--he's speaking in this session AND chairing the panel after it)
4:00 [Translational] Community development of human variant calling and validation pipelines
4:25 [Translational] Understanding Cancer Genomes Using Galaxy
4:40-5:30 Panel: Strategies for Funding and Maintaining Open Source Software Moderator: Brad Chapman

Panelists: Peter Cock, Sean Eddy, Carole Goble, Richard Holland, Scott Markel, Jean Peccoud

5:30-5:40 Presentation of Student Travel Awards Nomi Harris
5:40-6:40 BOFs


Return to BOSC 2013 main page

Retrieved from "https://www.open-bio.org/w/index.php?title=BOSC_2013_Schedule&oldid=3283"