-

Difference between revisions of "Help:FAQ"

From Open Bioinformatics Foundation
Jump to: navigation, search
m (How do I cite an O|B|F affiliated project in my publication?: updated openBQS link)
 
(5 intermediate revisions by 4 users not shown)
Line 1: Line 1:
 
== How do I cite an O|B|F project in my publication? ==
 
== How do I cite an O|B|F project in my publication? ==
* Overall view of the Bio* projects - PubMed ID [http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=12230038&query_hl=2&itool=pubmed_docsum 12230038]
+
* Overall view of the Bio* projects <cite>mangalam</cite>
 
* [http://www.biojava.org BioJava] - cite the [http://biojava.org/ project website]
 
* [http://www.biojava.org BioJava] - cite the [http://biojava.org/ project website]
* [[bp:BioPerl|BioPerl]] - PubMed ID [http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=12368254&dopt=Citation 12368254]
+
* [[bp:BioPerl|BioPerl core]] and [[bp:PopGen modules|Population genetics modules]] <cite>bioperl,perlymorphism</cite> also see [[bp:BioPerl publications|BioPerl Publications]]
* [http://biopipe.org BioPipe] - no publication details available
+
* [http://biopipe.org BioPipe] which uses bioperl-run <cite>biopipe</cite>
* [http://www.biopython.org BioPython] - cite the website at [http://biopython.org/ project website]
+
* [http://www.biopython.org BioPython] - cite the [http://biopython.org/ project website]
 
* [http://www.bioruby.org BioRuby] - no publication details available
 
* [http://www.bioruby.org BioRuby] - no publication details available
 +
* BioSQL - see OBDA below
 +
 
== How do I cite an O|B|F affiliated project in my publication? ==
 
== How do I cite an O|B|F affiliated project in my publication? ==
* [http://www.biodas.org DAS] - PubMed ID [http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=11667947&query_hl=14&itool=pubmed_docsum 11667947]
+
* [http://www.biodas.org DAS] <cite>das</cite>
* [http://www.biomoby.org MOBY] - PubMed ID [http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=12511062&query_hl=16&itool=pubmed_docsum 12511062]
+
* [http://www.biomoby.org MOBY] <cite>moby</cite>
* [http://www.emboss.org EMBOSS] - PubMed ID [http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=12002227&query_hl=20&itool=pubmed_docsum 12002227]
+
* [http://www.emboss.org EMBOSS] <cite>emboss</cite>
* [http://obda.open-bio.org OBDA] - no publication details available
+
* [http://obda.open-bio.org OBDA] - (Lapp et al, ''in prep'')
* [http://www.gmod.org/ggb Generic Genome Browser] - PubMed ID [http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=12368253&query_hl=23&itool=pubmed_docsum 12368253]
+
* [http://www.gmod.org/ggb Generic Genome Browser] <cite>gbrowse</cite>
 
* [http://www.gmod.org/schema/ Chado] - no publication details available
 
* [http://www.gmod.org/schema/ Chado] - no publication details available
* [http://www.pasteur.fr/recherche/unites/sis/Pise/ Pise] - PubMed ID [http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=12511068&query_hl=27&itool=pubmed_docsum 12511068]
+
* [http://www.pasteur.fr/recherche/unites/sis/Pise/ Pise] <cite>pise</cite>
* [http://industry.ebi.ac.uk/openBQS/ openBQS] - no publication details available
+
* [http://www.ebi.ac.uk/~senger/openbqs/ openBQS] - no publication details available
 
* [http://blipkit.org BlipKit] - no publication details available
 
* [http://blipkit.org BlipKit] - no publication details available
* [http://skam.sourceforge.net/ BioMake &amp; Skam] - PubMed ID [http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=14651855&query_hl=31&itool=pubmed_docsum 14651855] (uncertain if this was original paper?)
+
* [http://skam.sourceforge.net/ BioMake &amp; Skam]
 +
 
 
== How do I cite an O|B|F related project in my publication? ==
 
== How do I cite an O|B|F related project in my publication? ==
 
* [http://biophp.org BioPHP] - no publication details available
 
* [http://biophp.org BioPHP] - no publication details available
* [http://www.yandell-lab.org/cgl/ CGL] - no publication details available
+
* [http://www.yandell-lab.org/cgl/ Comparative Genomics Library] and [[bp:CGL|CGL Wiki page]]- (Yandell et al, ''in prep'')
 +
==References==
 +
<biblio>
 +
#mangalam pmid=12230038
 +
#bioperl pmid=12368254
 +
#perlymorphism pmid=15356276
 +
#biopipe pmid=12869579
 +
#pise pmid=12511068
 +
#gbrowse pmid=12368253
 +
#emboss pmid=12002227
 +
#moby pmid=12511062
 +
#das pmid=11667947
 +
</biblio>

Latest revision as of 13:18, 9 April 2008

How do I cite an O|B|F project in my publication?

How do I cite an O|B|F affiliated project in my publication?

How do I cite an O|B|F related project in my publication?

References

<biblio>

  1. mangalam pmid=12230038
  2. bioperl pmid=12368254
  3. perlymorphism pmid=15356276
  4. biopipe pmid=12869579
  5. pise pmid=12511068
  6. gbrowse pmid=12368253
  7. emboss pmid=12002227
  8. moby pmid=12511062
  9. das pmid=11667947

</biblio>